DocumentCode :
85658
Title :
Classification of Proteomic MS Data as Bayesian Solution of an Inverse Problem
Author :
Szacherski, Pascal ; Giovannelli, Jean-Francois ; Gerfault, Laurent ; Mahe, Pierre ; Charrier, Jean-Philippe ; Giremus, Audrey ; Lacroix, Bruno ; Grangeat, Pierre
Author_Institution :
Univ. Grenoble Alpes, Grenoble, France
Volume :
2
fYear :
2014
fDate :
2014
Firstpage :
1248
Lastpage :
1262
Abstract :
The cells in an organism emit different amounts of proteins according to their clinical state (healthy/pathological, for instance). The resulting proteomic profile can be used for early detection, diagnosis, and therapy planning. In this paper, we study the classification of a proteomic sample from the point of view of an inverse problem with a joint Bayesian solution, called inversion-classification. We propose a hierarchical physical forward model and present encouraging results from both simulation and clinical data.
Keywords :
Bayes methods; biology computing; cellular biophysics; inverse problems; medical computing; patient diagnosis; patient treatment; proteins; proteomics; Bayesian solution; biological cells; early detection; early diagnosis; hierarchical physical forward model; inverse problem; inversion classification; proteomic MS data classification; therapy planning; Biological cells; Biomedical monitoring; Biomedical signal processing; Cells (biology); Chromatography; Classification algorithms; Inverse problems; Liquid chromatography; Probability; Proteins; Signal processing; Statistical analysis; Liquid Chromatography; Mass Spectrometry; Selective Reaction Monitoring; Statistical signal processing; classification algorithms; inverse problems; liquid chromatography; mass spectrometry; mathematical modelling; probability; proteins; proteomics; selective reaction monitoring; statistical signal processing;
fLanguage :
English
Journal_Title :
Access, IEEE
Publisher :
ieee
ISSN :
2169-3536
Type :
jour
DOI :
10.1109/ACCESS.2014.2359979
Filename :
6910218
Link To Document :
بازگشت