DocumentCode
86477
Title
A Novel Synthesizing Genetic Logic Circuit: Frequency Multiplier
Author
Chia-Hua Chuang ; Chun-Liang Lin
Author_Institution
Dept. of Electr. Eng., Nat. Chung Hsing Univ., Taichung, Taiwan
Volume
11
Issue
4
fYear
2014
fDate
July-Aug. 1 2014
Firstpage
702
Lastpage
713
Abstract
This paper presents a novel synthesizing genetic logic circuit design based on an existing synthetic genetic oscillator, which provides a function of frequency multiplier to synthesize a clock signal whose frequency is a multiple of that of the genetic oscillator. In the renowned literature, the synthetic genetic oscillator, known as a repressilator, has been successfully built in Escherichia coli to generate a periodic oscillating phenomenon through three repressive genes repress each other in a chain. On the basis of this fact, our proposed genetic frequency multiplier circuit utilizes genetic Buffers in series with a waveform-shaping circuit to reshape the genetic oscillation signal into a crisp logic clock signal. By regulating different threshold levels in the Buffer, the time length of logic high/low levels in a fundamental sinusoidal wave can be engineered to pulse-width-modulated (PWM) signals with various duty cycles. Integrating some of genetic logic XOR gates and PWM signals from the output of the Buffers, a genetic frequency multiplier circuit can be created and the clock signal with the integer-fold of frequency of the genetic oscillator is generated. The synthesized signal can be used in triggering the downstream digital genetic logic circuits. Simulation results show the applicability of the proposed idea.
Keywords
biology computing; frequency multipliers; genetics; genomics; integrated logic circuits; logic design; logic gates; microorganisms; oscillators; Escherichia coli; PWM signals; crisp logic clock signal; downstream digital genetic logic circuits; fundamental sinusoidal wave; genetic buffers; genetic frequency multiplier circuit function; genetic logic XOR gates; genetic logic circuit design synthesis; periodic oscillating phenomenon; pulse-width-modulated signals; repressilator; repressive genes; synthetic genetic oscillator; waveform-shaping circuit series; Clocks; Genetics; Logic circuits; Logic gates; Oscillators; Proteins; Pulse width modulation; Synthetic biology; genetic logic gate; genetic oscillator; waveform-shaping circuit;
fLanguage
English
Journal_Title
Computational Biology and Bioinformatics, IEEE/ACM Transactions on
Publisher
ieee
ISSN
1545-5963
Type
jour
DOI
10.1109/TCBB.2014.2316814
Filename
6802398
Link To Document