Title :
FPGA-Based Virtual Screening Acceleration of Rigid-Molecule Docking
Author :
Navarro, D. ; Lucia, O. ; Gil-Narvion, Jose M. ; Jimenez, Oscar
Author_Institution :
Univ. of Zaragoza, Zaragoza, Spain
Abstract :
Virtual screening is a key process used to identify the most suitable molecule combinations when developing a new drug. Molecule docking is a commonly used method to analyze molecule structures and requires computing large databases to identify possible affinities between molecules. The special-purpose, field-programmable gate array (FPGA)-based Janus supercomputer accelerates the virtual screening process.
Keywords :
drugs; field programmable gate arrays; molecular biophysics; pharmaceutical technology; FPGA; Janus supercomputer; affinity identification; drug development; field-programmable gate array; large databases; molecule combinations; molecule structure analysis; rigid-molecule docking; virtual screening acceleration; Acceleration; Computer architecture; Databases; Field programmable gate arrays; Signal processing algorithms; Three-dimensional displays; Virtual environments; Acceleration; Computer architecture; Databases; Field programmable gate arrays; Signal processing algorithms; Three-dimensional displays; Virtual environments; algorithms implemented in hardware; hardware description languages; scientific computing; special-purpose hardware;
Journal_Title :
Computing in Science & Engineering
DOI :
10.1109/MCSE.2012.88