DocumentCode :
951309
Title :
Serially regulated biological networks fully realise a constrained set of functions
Author :
Mugler, A. ; Ziv, E. ; Nemenman, I. ; Wiggins, C.H.
Author_Institution :
Dept. of Phys., Columbia Univ., New York, NY
Volume :
2
Issue :
5
fYear :
2008
fDate :
9/1/2008 12:00:00 AM
Firstpage :
313
Lastpage :
322
Abstract :
It is shown that biological networks with serial regulation (each node regulated by at most one other node) are constrained to direct functionality, in which the sign of the effect of an environmental input on a target species depends only on the direct path from the input to the target, even when there is a feedback loop allowing for multiple interaction pathways. Using a stochastic model for a set of small transcriptional regulatory networks that have been studied experimentally, it is further found that all networks can achieve all functions permitted by this constraint under reasonable settings of biochemical parameters. This underscores the functional versatility of the networks.
Keywords :
biochemistry; feedback; genetics; molecular biophysics; stochastic processes; biochemical parameters; biological networks; feedback loop; multiple interaction pathways; serial regulation; stochastic model; target species; transcriptional regulatory networks;
fLanguage :
English
Journal_Title :
Systems Biology, IET
Publisher :
iet
ISSN :
1751-8849
Type :
jour
DOI :
10.1049/iet-syb:20080097
Filename :
4648912
Link To Document :
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