DocumentCode :
951447
Title :
MLEM deconvolution of protein X-ray diffraction images based on a multiple-PSF model
Author :
Zhu, Daan ; Razaz, Moe ; Hemmings, Andrew
Author_Institution :
Sch. of Comput. Sci., Univ. of East Anglia, London, UK
Volume :
5
Issue :
2
fYear :
2006
fDate :
6/1/2006 12:00:00 AM
Firstpage :
95
Lastpage :
102
Abstract :
In this paper we analyze the degradation of protein X-ray diffraction images by diffuse light distortion (DLD). In order to correct the degradation, a new multiple point spread function (PSF) model is introduced and used to restore X-ray diffraction image data (XRD). Raw PSFs are collected from isolated spots in high-resolution areas on the diffraction patterns which represent the orientation of DLDs. An adaptive ridge regression (ARR) technique is used to remove noise from the raw PSF data. A target Gaussian function is used to model the raw PSFs. A maximum likelihood expectation maximization (MLEM) algorithm combined with a multi-PSF model is employed to restore high intensity, asymmetrical protein X-ray diffraction data. Experimental results using a single and multiple PSFs are presented and discussed. We show that using a multiple PSF model in the deconvolution algorithm improved the quality of the XRD and as a result the spot integration error (χ2) and corresponding electron density map are improved.
Keywords :
Gaussian processes; X-ray diffraction; biological techniques; biology computing; deconvolution; expectation-maximisation algorithm; image processing; molecular biophysics; molecular configurations; optical transfer function; proteins; regression analysis; Gaussian function; MLEM deconvolution; X-ray diffraction images; adaptive ridge regression; deconvolution; diffuse light distortion; electron density map; maximum likelihood expectation maximization; multiple-PSF model; point spread function; protein degradation; spot integration error; Deconvolution; Degradation; Image restoration; Optical diffraction; Optical imaging; Optical scattering; Proteins; X-ray diffraction; X-ray imaging; X-ray scattering; Deconvolution; X-ray diffraction; diffuse light distortion (DLD); maximum likelihood; Algorithms; Computer Simulation; Models, Chemical; Models, Molecular; Models, Statistical; Protein Conformation; Proteins; Regression Analysis; Scattering, Radiation; X-Ray Diffraction;
fLanguage :
English
Journal_Title :
NanoBioscience, IEEE Transactions on
Publisher :
ieee
ISSN :
1536-1241
Type :
jour
DOI :
10.1109/TNB.2006.875046
Filename :
1637450
Link To Document :
بازگشت