• DocumentCode
    951447
  • Title

    MLEM deconvolution of protein X-ray diffraction images based on a multiple-PSF model

  • Author

    Zhu, Daan ; Razaz, Moe ; Hemmings, Andrew

  • Author_Institution
    Sch. of Comput. Sci., Univ. of East Anglia, London, UK
  • Volume
    5
  • Issue
    2
  • fYear
    2006
  • fDate
    6/1/2006 12:00:00 AM
  • Firstpage
    95
  • Lastpage
    102
  • Abstract
    In this paper we analyze the degradation of protein X-ray diffraction images by diffuse light distortion (DLD). In order to correct the degradation, a new multiple point spread function (PSF) model is introduced and used to restore X-ray diffraction image data (XRD). Raw PSFs are collected from isolated spots in high-resolution areas on the diffraction patterns which represent the orientation of DLDs. An adaptive ridge regression (ARR) technique is used to remove noise from the raw PSF data. A target Gaussian function is used to model the raw PSFs. A maximum likelihood expectation maximization (MLEM) algorithm combined with a multi-PSF model is employed to restore high intensity, asymmetrical protein X-ray diffraction data. Experimental results using a single and multiple PSFs are presented and discussed. We show that using a multiple PSF model in the deconvolution algorithm improved the quality of the XRD and as a result the spot integration error (χ2) and corresponding electron density map are improved.
  • Keywords
    Gaussian processes; X-ray diffraction; biological techniques; biology computing; deconvolution; expectation-maximisation algorithm; image processing; molecular biophysics; molecular configurations; optical transfer function; proteins; regression analysis; Gaussian function; MLEM deconvolution; X-ray diffraction images; adaptive ridge regression; deconvolution; diffuse light distortion; electron density map; maximum likelihood expectation maximization; multiple-PSF model; point spread function; protein degradation; spot integration error; Deconvolution; Degradation; Image restoration; Optical diffraction; Optical imaging; Optical scattering; Proteins; X-ray diffraction; X-ray imaging; X-ray scattering; Deconvolution; X-ray diffraction; diffuse light distortion (DLD); maximum likelihood; Algorithms; Computer Simulation; Models, Chemical; Models, Molecular; Models, Statistical; Protein Conformation; Proteins; Regression Analysis; Scattering, Radiation; X-Ray Diffraction;
  • fLanguage
    English
  • Journal_Title
    NanoBioscience, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    1536-1241
  • Type

    jour

  • DOI
    10.1109/TNB.2006.875046
  • Filename
    1637450