Title :
Robust
-Stabilization Design in Gene Networks Under Stochastic Molecular Noises: Fuzzy-Interpolation Approach
Author :
Chen, Bor-Sen ; Chang, Yu-Te ; Wang, Yu-Chao
Author_Institution :
Dept. of Electr. Eng., Nat. Tsing Hua Univ., Hsinchu, Taiwan
Abstract :
Molecular noises in gene networks come from intrinsic fluctuations, transmitted noise from upstream genes, and the global noise affecting all genes. Knowledge of molecular noise filtering in gene networks is crucial to understand the signal processing in gene networks and to design noise-tolerant gene circuits for synthetic biology. A nonlinear stochastic dynamic model is proposed in describing a gene network under intrinsic molecular fluctuations and extrinsic molecular noises. The stochastic molecular-noise-processing scheme of gene regulatory networks for attenuating these molecular noises is investigated from the nonlinear robust stabilization and filtering perspective. In order to improve the robust stability and noise filtering, a robust gene circuit design for gene networks is proposed based on the nonlinear robust stochastic stabilization and filtering scheme, which needs to solve a nonlinear Hamilton-Jacobi inequality. However, in order to avoid solving these complicated nonlinear stabilization and filtering problems, a fuzzy approximation method is employed to interpolate several linear stochastic gene networks at different operation points via fuzzy bases to approximate the nonlinear stochastic gene network. In this situation, the method of linear matrix inequality technique could be employed to simplify the gene circuit design problems to improve robust stability and molecular-noise-filtering ability of gene networks to overcome intrinsic molecular fluctuations and extrinsic molecular noises.
Keywords :
Jacobian matrices; approximation theory; biocontrol; fuzzy control; fuzzy set theory; fuzzy systems; genetics; interpolation; linear matrix inequalities; molecular biophysics; nonlinear dynamical systems; robust control; stochastic systems; fuzzy approximation method; fuzzy-interpolation approach; gene network; intrinsic fluctuation; intrinsic molecular fluctuation; linear matrix inequality; noise filtering; noise-tolerant gene circuit design; nonlinear Hamilton-Jacobi inequality; nonlinear stochastic dynamic model; robust Hinfin-stabilization design; stochastic molecular noise; stochastic molecular-noise-processing scheme; synthetic biology; Biomedical signal processing; Circuit noise; Circuit synthesis; Filtering; Fluctuations; Noise robustness; Robust stability; Signal design; Stochastic resonance; Synthetic biology; Fuzzy approximation; gene circuit design; gene network; molecular noise; robust $H_{infty}$ filtering; robust $H_{infty}$ stabilization; robust $H_{infty}$ filtering; robust $H_{infty}$ stabilization; Computer Simulation; Fuzzy Logic; Gene Expression; Models, Biological; Models, Statistical; Proteome; Signal Transduction; Stochastic Processes;
Journal_Title :
Systems, Man, and Cybernetics, Part B: Cybernetics, IEEE Transactions on
DOI :
10.1109/TSMCB.2007.906975