Title :
Sparse-Grid-Based Adaptive Model Predictive Control of HL60 Cellular Differentiation
Author :
Noble, Sarah L. ; Wendel, Lindsay E. ; Donahue, Maia M. ; Buzzard, Gregery T. ; Rundell, Ann E.
Author_Institution :
Weapons & Syst. Eng. Dept., United States Naval Acad., Annapolis, MD, USA
Abstract :
Quantitative methods such as model-based predictive control are known to facilitate the design of strategies to manipulate biological systems. This study develops a sparse-grid-based adaptive model predictive control (MPC) strategy to direct HL60 cellular differentiation. Sparse-grid sampling and interpolation support a computationally efficient adaptive MPC scheme in which multiple data-consistent regions of the model parameter space are identified and used to calculate a control compromise. The algorithm is evaluated in silico with structural model mismatch. Simulations demonstrate how the multiscenario control strategy more effectively manages the mismatch compared to a single scenario approach. Furthermore, the controller is evaluated in vitro to differentiate HL60 cells in both normal and perturbed environments. The controller-derived input sequence successfully achieves and sustains the specified target level of granulocytes when implemented in the laboratory. The results and analysis given here imply that adoption of this experiment planning technique to direct cell differentiation within more complex tissue engineered constructs will require the use of a reasonably accurate mathematical model and an extension of this algorithm to multiobjective controller design.
Keywords :
biological techniques; biology computing; cellular biophysics; tissue engineering; HL60 cellular differentiation; controller-derived input sequence; granulocyte; multiobjective controller design; multiscenario control strategy; sparse-grid interpolation; sparse-grid sampling; sparse-grid-based adaptive model predictive control strategy; structural model mismatch; tissue engineering; Adaptation models; Biological system modeling; Computational modeling; Data models; Mathematical model; Optimization; Vectors; Biological system; control theory; in vitro experiments; interpolated dynamics; nonunique and fuzzy parameters; tissue engineering; Cell Differentiation; Computer Simulation; Fuzzy Logic; HL-60 Cells; Humans; Models, Biological; Systems Biology;
Journal_Title :
Biomedical Engineering, IEEE Transactions on
DOI :
10.1109/TBME.2011.2174361