• DocumentCode
    1435637
  • Title

    Legitimacy of the stochastic Michaelis??Menten approximation

  • Author

    Sanft, K.R. ; Gillespie, D.T. ; Petzold, L.R.

  • Author_Institution
    Dept. of Comput. Sci., Univ. of California Santa Barbara, Santa Barbara, CA, USA
  • Volume
    5
  • Issue
    1
  • fYear
    2011
  • fDate
    1/1/2011 12:00:00 AM
  • Firstpage
    58
  • Lastpage
    69
  • Abstract
    Michaelis-Menten kinetics are commonly used to represent enzyme-catalysed reactions in biochemical models. The Michaelis-Menten approximation has been thoroughly studied in the context of traditional differential equation models. The presence of small concentrations in biochemical systems, however, encourages the conversion to a discrete stochastic representation. It is shown that the Michaelis-Menten approximation is applicable in discrete stochastic models and that the validity conditions are the same as in the deterministic regime. The authors then compare the Michaelis-Menten approximation to a procedure called the slow-scale stochastic simulation algorithm (ssSSA). The theory underlying the ssSSA implies a formula that seems in some cases to be different from the well-known Michaelis-Menten formula. Here those differences are examined, and some special cases of the stochastic formulas are confirmed using a first-passage time analysis. This exercise serves to place the conventional Michaelis-Menten formula in a broader rigorous theoretical framework.
  • Keywords
    biochemistry; catalysis; differential equations; enzymes; reaction kinetics theory; stochastic processes; Michaelis-Menten approximation; biochemical models; differential equation models; enzyme-catalysed reactions; first-passage time analysis; slow-scale stochastic simulation algorithm;
  • fLanguage
    English
  • Journal_Title
    Systems Biology, IET
  • Publisher
    iet
  • ISSN
    1751-8849
  • Type

    jour

  • DOI
    10.1049/iet-syb.2009.0057
  • Filename
    5701744