Title :
Classification of leukemia gene expression profiles based on multivariant optimization algorithm
Author :
Yajie Liu ; Xinling Shi ; Changxing Gou ; Baolei Li ; Qinhu Zhang ; Lv DanJv ; Yunchao Huang
Author_Institution :
Inf. Sch., Yunnan Univ., Kunming, China
Abstract :
Classification of leukemia samples based on gene expression profiles has been proved an efficient way. Large numbers of intelligence algorithms have been exploited based on this purpose. However, few of them display stable and accurate performance for both low and high gene dimensionalities. Still none of them could keep the history information of optimization. Here, a classification algorithm based on the novel multivariant optimization algorithm (MOA) is proposed. Leukemia gene expression profiles with different dimensionalities are used for validation. The particle swarm optimization (PSO) and the two-layer particle swarm optimization (TLPSO) algorithm are used for comparison. The MOA shows stable and relatively accurate classification performance and could be used as an effective classification algorithm for gene expression profiles.
Keywords :
bioinformatics; blood; cancer; genetics; genomics; learning (artificial intelligence); particle swarm optimisation; intelligence algorithms; leukemia gene expression profile classification; multivariant optimization algorithm; two-layer particle swarm optimization algorithm; Accuracy; Classification algorithms; Gene expression; Optimization; Particle swarm optimization; Prediction algorithms; Tumors; MOA; classification; gene; leukemia; multivariant optimization algorithm;
Conference_Titel :
Bioelectronics and Bioinformatics (ISBB), 2014 IEEE International Symposium on
Conference_Location :
Chung Li
Print_ISBN :
978-1-4799-2769-2
DOI :
10.1109/ISBB.2014.6820912