• DocumentCode
    1728338
  • Title

    Accessing biodiversity resources in computational environments from workflow applications

  • Author

    Pahwa, J.S. ; White, R.J. ; Jones, A.C. ; Burgess, M. ; Gray, W.A. ; Fiddian, N.J. ; Sutton, T. ; Brewer, P. ; Yesson, C. ; Caithness, N. ; Culham, A. ; Bisby, F.A. ; Scoble, M. ; Williams, P. ; Bhagwat, S.

  • Author_Institution
    Cardiff Sch. of Comput. Sci., Cardiff Univ., Cardiff, UK
  • fYear
    2006
  • Firstpage
    1
  • Lastpage
    10
  • Abstract
    In the biodiversity world (BDW) project we have created a flexible and extensible Web services-based grid environment for biodiversity researchers to solve problems in biodiversity and analyse biodiversity patterns. In this environment, heterogeneous and globally distributed biodiversity-related resources such as data sets and analytical tools are made available to be accessed and assembled by users into workflows to perform complex scientific experiments. One such experiment is bioclimatic modelling of the geographical distribution of individual species using climate variables in order to predict past and future climate-related changes in species distribution. Data sources and analytical tools required for such analysis of species distribution are widely dispersed, available on heterogeneous platforms, present data in different formats and lack interoperability. The BDW system brings all these disparate units together so that the user can combine tools with little thought as to their availability, data formats and interoperability. The current Web Services-based grid environment enables execution of the BDW workflow tasks in remote nodes but with a limited scope. The next step in the evolution of the BDW architecture is to enable workflow tasks to utilise computational resources available within and outside the BDW domain. We describe the present BDW architecture and its transition to a new framework which provides a distributed computational environment for mapping and executing workflows in addition to bringing together heterogeneous resources and analytical tools.
  • Keywords
    Web services; biology computing; grid computing; open systems; scientific information systems; software architecture; software tools; workflow management software; BDW architecture; Web services-based grid environment; analytical tools; bioclimatic modelling; biodiversity resources; biodiversity world project; computational environments; data formats; data sources; distributed biodiversity-related resources; scientific experiments; workflow applications; Availability; Biodiversity; Biological system modeling; Computer architecture; Computer science; Data analysis; Distributed computing; Grid computing; Performance analysis; Predictive models;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Workflows in Support of Large-Scale Science, 2006. WORKS '06. Workshop on
  • Conference_Location
    Paris
  • Print_ISBN
    978-1-4244-5215-6
  • Type

    conf

  • DOI
    10.1109/WORKS.2006.5282352
  • Filename
    5282352