Title :
Virtual screening, ADMET profiling, molecular docking and dynamics approaches to search for potent selective natural molecule based inhibitors against metallothionein-III to study Alzheimer´s disease
Author :
Roy, Sandip ; Kumar, Ajit ; Provaznik, Ivo
Author_Institution :
Dept. of Biomed. Eng., Brno Univ. of Technol., Brno, Czech Republic
Abstract :
Motivation: Metallothionein-III (MT-III) displays neuro-inhibitory activity and is involved in the repair of neuronal damage. An altered expression level of MT-III suggests that it could be a mitigating factor in Alzheimer´s disease (AD) neuronal dysfunction. Currently there are limited marketed drugs available against MT-III. The inhibitors are mostly pseudo-peptide based with limited ADMET. In our present study, available database InterBioScreen (natural compounds) was screened out for MT-III. Pharmacodynamics and pharmacokinetic studies were performed. Molecular docking and simulations of top hit molecules were performed to study complex stability. Results: Study reveals potent selective molecules that interact and form hydrogen bonds with amino acids Ser-6 and Lys-22 which are common to established melatonin inhibitors for MT-III. These include DMHMIO, MCA B and s27533 derivatives. The ADMET profiling was better with comparable interaction energy values. It includes properties like blood brain barrier, hepatotoxicity, druggability, mutagenicity and carcinogenicity. Molecular dynamics studies were performed to validate our findings.
Keywords :
biochemistry; blood; brain; diseases; hydrogen bonds; molecular biophysics; neural nets; neurophysiology; organic compounds; patient treatment; AD neuronal dysfunction; ADMET profiling; Alzheimer disease; DMHMIO derivative; InterBioScreen; Lys-22; MCA B derivative; Ser-6; altered MT-III expression level; amino acids; blood brain barrier; carcinogenicity; druggability; dynamics approaches; hepatotoxicity; hydrogen bonds; metallothionein-III; molecular docking; molecular simulations; mutagenicity; neuroinhibitory activity; neuronal damage repair; pharmacodynamic study; pharmacokinetic study; potent selective molecules; potent selective natural molecule based inhibitor; pseudopeptide based; s27533 derivative; virtual screening; Alzheimer´s disease; Amino acids; Compounds; Hydrogen; Inhibitors; Proteins; ADMET; Alzheimer´s disease; Metallothionein-III; Molecular Dynamics; Virtual Screening;
Conference_Titel :
Bioinformatics and Biomedicine (BIBM), 2014 IEEE International Conference on
Conference_Location :
Belfast
DOI :
10.1109/BIBM.2014.6999184