DocumentCode
1920453
Title
An Ultra-Fast Computing Pipeline for Metagenome Analysis with Next-Generation DNA Sequencers
Author
Suzuki, Satoshi ; Ishida, Tomoyuki ; Akiyama, Yoko
Author_Institution
Dept. of Comput. Sci., Tokyo Inst. of Technol., Tokyo, Japan
fYear
2012
fDate
10-16 Nov. 2012
Firstpage
1549
Lastpage
1550
Abstract
Metagenome analysis is useful for not only understanding symbiotic systems but also watching environment pollutions. However, metagenome analysis requires sensitive sequence homology searches which require large computation time and it is thus a bottleneck in current metagenome analysis based on the data from the latest DNA sequencers generally called a next-generation sequencer. To solve the problem, we developed a large-scale computing pipeline for metagenome analysis on TSUBAME2.
Keywords
DNA; biology computing; genomics; TSUBAME2; environment pollutions; metagenome analysis; next-generation DNA sequencers; symbiotic systems; ultra-fast computing pipeline; GPGPU; metagenomics;
fLanguage
English
Publisher
ieee
Conference_Titel
High Performance Computing, Networking, Storage and Analysis (SCC), 2012 SC Companion:
Conference_Location
Salt Lake City, UT
Print_ISBN
978-1-4673-6218-4
Type
conf
DOI
10.1109/SC.Companion.2012.320
Filename
6496104
Link To Document