DocumentCode
2038697
Title
A Logical Characterization of Individual-Based Models
Author
Lynch, James F.
Author_Institution
Dept. of Comput. Sci., Clarkson Univ., Potsdam, NY
fYear
2008
fDate
24-27 June 2008
Firstpage
379
Lastpage
390
Abstract
Individual-based models are a relatively new approach to modelling dynamical systems of interacting entities, for example molecules in a biological cell. Although they are computationally expensive, they have the capability of modelling systems more realistically than traditional state-variable models. We give a formal definition of individual-based models, which includes state-variable models as a special case. We examine the questions of when state-variable models are sufficient for accurate modelling of a system, and when individual-based models are necessary. We define notions of abstraction and approximation, and give sufficient conditions that imply that an individual-based model can be approximated by a deterministic state-variable model. We also give negative results: examples of individual-based models that cannot be approximated by any state-variable model.
Keywords
biochemistry; biology computing; formal verification; temporal logic; biochemical network; deterministic state-variable model; dynamical systems modelling; individual-based models; interacting entity; model checking; temporal logic; Biochemistry; Biological cells; Biological system modeling; Chemistry; Computer science; Differential equations; Logic; Object oriented modeling; Physics; Sufficient conditions; finite model theory; probability; systems biology;
fLanguage
English
Publisher
ieee
Conference_Titel
Logic in Computer Science, 2008. LICS '08. 23rd Annual IEEE Symposium on
Conference_Location
Pittsburgh, PA
ISSN
1043-6871
Print_ISBN
978-0-7695-3183-0
Type
conf
DOI
10.1109/LICS.2008.27
Filename
4557927
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