• DocumentCode
    2038697
  • Title

    A Logical Characterization of Individual-Based Models

  • Author

    Lynch, James F.

  • Author_Institution
    Dept. of Comput. Sci., Clarkson Univ., Potsdam, NY
  • fYear
    2008
  • fDate
    24-27 June 2008
  • Firstpage
    379
  • Lastpage
    390
  • Abstract
    Individual-based models are a relatively new approach to modelling dynamical systems of interacting entities, for example molecules in a biological cell. Although they are computationally expensive, they have the capability of modelling systems more realistically than traditional state-variable models. We give a formal definition of individual-based models, which includes state-variable models as a special case. We examine the questions of when state-variable models are sufficient for accurate modelling of a system, and when individual-based models are necessary. We define notions of abstraction and approximation, and give sufficient conditions that imply that an individual-based model can be approximated by a deterministic state-variable model. We also give negative results: examples of individual-based models that cannot be approximated by any state-variable model.
  • Keywords
    biochemistry; biology computing; formal verification; temporal logic; biochemical network; deterministic state-variable model; dynamical systems modelling; individual-based models; interacting entity; model checking; temporal logic; Biochemistry; Biological cells; Biological system modeling; Chemistry; Computer science; Differential equations; Logic; Object oriented modeling; Physics; Sufficient conditions; finite model theory; probability; systems biology;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Logic in Computer Science, 2008. LICS '08. 23rd Annual IEEE Symposium on
  • Conference_Location
    Pittsburgh, PA
  • ISSN
    1043-6871
  • Print_ISBN
    978-0-7695-3183-0
  • Type

    conf

  • DOI
    10.1109/LICS.2008.27
  • Filename
    4557927