Title :
Recognition of Plant mRNA Polyadenylation Sites Based on High-Dimensional Space Points´ Covering Method
Author :
Ji, Guoli ; Zheng, Jianti ; Zou, Dan ; Dong, Min ; Qingshun Quinn Li
Author_Institution :
Dept. of Autom., Xiamen Univ., Xiamen
Abstract :
To accurately predict messenger RNA polyadenylation sites of the model plant Arabidopsis, we developed a new program using the method of High-Dimensional Space Points´ Covering, based on Biomimetic Pattern Recognition Theory. Upon analysis of experimental data and comparing with the results produced by Support Vector Machine, it is demonstrated that our program is reliable and effective judged by its specificity and sensitivity of the prediction. The program performed especially well with a reduced training sample size.
Keywords :
biomimetics; botany; macromolecules; organic compounds; pattern recognition; support vector machines; biomimetic pattern recognition; hyper sausage neuron; plant mRNA polyadenylation sites; space points covering method; support vector machine; biomimetic pattern recognition; high-dimensional space points´ covering; hyper sausage neuron; poly (A) site;
Conference_Titel :
Information Science and Engineering, 2008. ISISE '08. International Symposium on
Conference_Location :
Shanghai
Print_ISBN :
978-1-4244-2727-4
DOI :
10.1109/ISISE.2008.75