Title :
Complexity analysis and optimal experimental design for parameter estimation of biological systems
Author :
Wu, Fang-Xiang ; Mu, Lei ; Luo, Ruizhi
Author_Institution :
Dept. of Mech. Eng., Saskatchewan, Univ., Saskatoon, SK
Abstract :
A biological system describes the dynamics of a biological process and can be modeled by a group of nonlinear differential equations. The nonlinear terms in differential equations of a biological system result from the reaction rates which can not be measured and yet contain important parameters to be identified. In practice, not all states are measured because of the limitation of experimental conditions and cost. In this paper, we develop a methodology for complexity analysis and optimal experimental design to maximize the number of identifiable parameters in the reaction rates while minimizing the number of states which must be measured. We use the model of the programmed cell death or apoptosis as an instance to illustrate the proposed method. The analysis shows that the results from our proposed method are better than those from the existing methods.
Keywords :
biology; design of experiments; nonlinear differential equations; parameter estimation; apoptosis; biological systems; complexity analysis; nonlinear differential equations; parameter estimation; programmed cell death; Biological processes; Biological system modeling; Biological systems; Biomedical measurements; Design for experiments; Differential equations; Mathematical model; Nonlinear dynamical systems; Parameter estimation; State estimation; Complexity analysis; caspase model; experimental design; parameter estimation; reaction rates; stoichiometric matrix;
Conference_Titel :
Electrical and Computer Engineering, 2008. CCECE 2008. Canadian Conference on
Conference_Location :
Niagara Falls, ON
Print_ISBN :
978-1-4244-1642-4
Electronic_ISBN :
0840-7789
DOI :
10.1109/CCECE.2008.4564564