Title :
An Algorithm for alignment-free sequence comparison using Logical Match
Author :
Sanil Shanker, P.K. ; Austin, Jim ; Sherly, Elizabeth
Author_Institution :
Dept. of Comput. Sci., Univ. of Kerala, India
Abstract :
This paper proposes an algorithm for alignment-free sequence comparison using Logical Match. Here, we compute the score using fuzzy membership values which generate automatically from the number of matches and mismatches. We demonstrate the method with both the artificial and real datum. The results show the uniqueness of the method by analyzing DNA sequences taken from NCBI databank.
Keywords :
DNA; fuzzy logic; string matching; DNA sequences; NCBI databank; alignment-free sequence comparison; artificial datum; fuzzy membership values; logical match; real datum; Automation; Character generation; Computer science; DNA; Fuzzy logic; Information management; Information technology; Pattern matching; Sequences; Technology management; Alignment-free sequence comparison; Fuzzy membership; Logical Match; String match;
Conference_Titel :
Computer and Automation Engineering (ICCAE), 2010 The 2nd International Conference on
Conference_Location :
Singapore
Print_ISBN :
978-1-4244-5585-0
Electronic_ISBN :
978-1-4244-5586-7
DOI :
10.1109/ICCAE.2010.5452072
