DocumentCode :
2341321
Title :
Design of genetic switches with only positive feedback loops
Author :
Kobayashi, Tetsuya ; Chen, Luonan ; Aihara, Kazuyuki
Author_Institution :
Univ. of Tokyo, Japan
fYear :
2002
fDate :
2002
Firstpage :
151
Lastpage :
162
Abstract :
We develop a new methodology to design synthetic genetic switch networks with multiple genes and time delays, by using monotone dynamical theory. We show that the networks with only positive feedback loops have no stable oscillation except equilibria whose stability is also independent of the time delays. Such systems have ideal properties for switch networks and can be designed without consideration of time delays, because the systems can be reduced from functional spaces to Euclidian spaces due to the independence to time delays. Specifically, we first prove the basic properties of the genetic networks composed of only positive feedback loops, and then propose a procedure to design the switches, which drastically simplifies analysis of the switches and makes theoretical analysis and designing tractable even for large scale systems. Finally, we demonstrate our theoretical results by designing a biologically plausible synthesized genetic switch with experimentally well investigated lacI, tetR, and cI genes.
Keywords :
delays; feedback; genetics; stability; Euclidian spaces; cI genes; genetic switch design; genetic switch networks; lacI genes; large-scale systems; monotone dynamical theory; multiple genes; positive feedback loops; stable oscillation; tetR genes; time delays; Control system synthesis; Delay effects; Design methodology; Differential equations; Feedback loop; Genetics; Mathematical model; Network synthesis; Stability; Switches;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics Conference, 2002. Proceedings. IEEE Computer Society
Print_ISBN :
0-7695-1653-X
Type :
conf
DOI :
10.1109/CSB.2002.1039338
Filename :
1039338
Link To Document :
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