Title :
LZW mutual-information-maximizing input clustering algorithm
Author :
Watchanupaporn, Orawan ; Suwannik, Worasait
Author_Institution :
Dept. of Comput. Sci., Kasetsart Univ., Bangkok, Thailand
Abstract :
This paper proposes a new evolutionary algorithm called LZWMIMIC. The proposed algorithm combines the LZW compressed chromosome encoding and Mutual-Information-Maximizing Input Clustering (MIMIC) algorithm. The advantage of LZW encoding is that it reduces the search space thus speeds up the evolutionary search. The advantage of MIMIC is that it can solve complex problem by finding a relationship between gene positions. The performance of the original MIMIC and LZWMIMIC are compared on standard benchmark problems. Further, compressed chromosome length and problem size are varied to see their effect in the performance. The experimental results show that our proposed algorithm outperforms the original MIMIC.
Keywords :
bioinformatics; biological techniques; cellular biophysics; data compression; genetics; molecular biophysics; molecular configurations; pattern clustering; LZW compressed chromosome encoding; LZW encoding; LZWMIMIC algorithm; Lempel-Ziv-Welch algorithm; gene position relationship; mutual information maximizing input clustering; Arrays; Biological cells; Dictionaries; Evolutionary computation; Genetic algorithms; MIMICs; Optimization; EDA; LZW; MIMIC;
Conference_Titel :
Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-1-4244-9351-7
DOI :
10.1109/BMEI.2011.6098783