• DocumentCode
    260310
  • Title

    Essential Gene Identification for a Microarray Data of Yersinia Pestis

  • Author

    Lianfen Qian ; Wei Zhang ; Zhongwei Li

  • Author_Institution
    Dept. of Math. Sci., Florida Atlantic Univ., Boca Raton, FL, USA
  • fYear
    2014
  • fDate
    10-12 Nov. 2014
  • Firstpage
    185
  • Lastpage
    190
  • Abstract
    This paper is motivated by a DNA micro array data obtained from a genome-wide mutation library for the bacterium Yersinia Pestis. The purpose of this study is to identify essential genes for the bacterium Yersinia Pestis. The data set contains more than four thousands genes and each gene has different number of observations with unequal number of probe observations. We propose a feature selection method for the representing three probes and a new gene level adjusted multiple statistical test to handle the problem of unequal number of observations. The proposed method is compared with two other methods based on Behrens-Fisher method and Hotelling t-square method. Our results show that our proposed method is more suitable among the three for identifying essential genes using the DNA micro array data.
  • Keywords
    data analysis; genomics; lab-on-a-chip; microorganisms; statistical analysis; Behrens-Fisher method; DNA micro array data; Hotelling t-square method; Yersinia pestis; feature selection method; gene identification; genome-wide mutation library; microarray data; probe observation; statistical test; Bioinformatics; DNA; Educational institutions; Genomics; Libraries; Market research; Probes; Microarray; Yersinia pestis; essential genes; gene-level adjusted multiple t-test; genome-wide mutagenesis; number of probes;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Bioengineering (BIBE), 2014 IEEE International Conference on
  • Conference_Location
    Boca Raton, FL
  • Type

    conf

  • DOI
    10.1109/BIBE.2014.20
  • Filename
    7033579