DocumentCode :
2719479
Title :
Performance and implementation of distributed data CPHF and SCF algorithms
Author :
Alexeev, Yuri ; Schmidt, Michael W. ; Windus, Theresa L. ; Gordon, Mark S. ; Kendall, Ricky A.
Author_Institution :
Ames Lab., Iowa State Univ., Ames, IA, USA
fYear :
2002
fDate :
2002
Firstpage :
135
Lastpage :
142
Abstract :
This paper describes a novel distributed data parallel self consistent field (SCF) algorithm and the distributed data coupled perturbed Hartree-Fock (CPHF) step of an analytic Hessian algorithm. The distinguishing features of these algorithms are: (a) columns of density and Fock matrices are distributed among processors, (b) pairwise dynamic load balancing and an efficient static load balancer were developed to achieve a good workload, and (c) network communication time is minimized via careful analysis of data flow in the SCF and CPHF algorithms. By using a shared memory model, novel work load balancers, and improved analytic Hessian steps, we have developed codes that achieve superb performance. The performance of the CPHF code is demonstrated on a large biological system.
Keywords :
HF calculations; Hessian matrices; SCF calculations; biology computing; chemistry computing; distributed algorithms; quantum chemistry; resource allocation; shared memory systems; software performance evaluation; workstation clusters; Fock matrices; analytic Hessian algorithm; analytic Hessian steps; distributed data SCF algorithm; distributed data coupled perturbed Hartree-Fock step; efficient static load balancer; large biological system; network communication time; pairwise dynamic load balancing; performance; shared memory model; Algorithm design and analysis; Chemicals; Chemistry; Clustering algorithms; Concurrent computing; Data models; Distributed computing; Games; Postal services; Wave functions;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Cluster Computing, 2002. Proceedings. 2002 IEEE International Conference on
Print_ISBN :
0-7695-2066-9
Type :
conf
DOI :
10.1109/CLUSTR.2002.1137738
Filename :
1137738
Link To Document :
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