Title :
eResearch Solutions for High Throughput Structural Biology
Author :
Faux, Noel ; Beitz, Anthony ; Bate, Mark ; Amin, Abdullah A. ; Atkinson, Ian ; Enticott, Colin ; Mahmood, Khalid ; Swift, Matthew ; Treloar, Andrew ; Abramson, David ; Whisstock, James C. ; Buckle, Ashley M.
Author_Institution :
Monash Univ., Clayton
Abstract :
Structural biology research places significant demands upon computing and informatics infrastructure. Protein production, crystallization and X-ray data collection require solutions to data management, annotation, target tracking and remote experiment monitoring. Structure elucidation is computationally demanding and requires user-friendly interfaces to high-performance computing resources. Here we discuss how these challenges are being met at the Protein Crystallography Unit at Monash University. Specifically, we have developed informatics solutions for each stage in the structural biology pipeline, from DNA cloning through to protein structure determination. This infrastructure will be pivotal for accelerating the process of structural discovery and will be of significant interest to other laboratories worldwide.
Keywords :
DNA; biology computing; data analysis; molecular biophysics; molecular configurations; proteins; research and development; user interfaces; DNA cloning; X-ray data collection; computing infrastructure; crystallization; data annotation; data management; eResearch solutions; high throughput structural biology; high-performance computing resources; informatics infrastructure; protein crystallography unit; protein production; protein structure determination; remote experiment monitoring; structure elucidation; target tracking; user-friendly interfaces; Biology computing; Computer interfaces; Crystallization; Crystallography; Informatics; Production; Proteins; Remote monitoring; Target tracking; Throughput;
Conference_Titel :
e-Science and Grid Computing, IEEE International Conference on
Conference_Location :
Bangalore
Print_ISBN :
978-0-7695-3064-2
DOI :
10.1109/E-SCIENCE.2007.31