Title :
Synthetic gene oscillators by negative feedback networks
Author :
Wang, Ruiqi ; Zhou, Tianshou ; Chen, Luonan
Author_Institution :
Osaka Sangyo Univ., Japan
Abstract :
We aim at developing a new methodology to model and design periodic oscillators of gene regulatory networks with multiple genes, proteins and time delays, by using multiple time-scale networks (MTN). Multiple time scale properties are exploited to simplify the model according to singular perturbation theory. We show that a MTN has no stable equilibria but stable periodic orbits. Finally, we design a biologically plausible gene oscillator by cI and Lac genes, to demonstrate our theoretical results.
Keywords :
biocybernetics; cellular biophysics; closed loop systems; delays; genetics; molecular biophysics; proteins; singularly perturbed systems; time-varying networks; Lac genes; cI genes; gene regulatory networks; multiple genes; multiple time-scale networks; negative feedback networks; periodic orbits; periodic oscillators; proteins; singular perturbation theory; synthetic gene oscillators; systems biology; time delays; Biological system modeling; Chemical analysis; Delay effects; Negative feedback; Orbits; Organisms; Oscillators; Predictive models; Protein engineering; Systems biology; Gene network; feedback; periodic oscillation; systems biology;
Conference_Titel :
Engineering in Medicine and Biology Society, 2004. IEMBS '04. 26th Annual International Conference of the IEEE
Conference_Location :
San Francisco, CA
Print_ISBN :
0-7803-8439-3
DOI :
10.1109/IEMBS.2004.1403819