DocumentCode
2861853
Title
Detection of Spot from Complex Regions Based on Geodesic Distance
Author
Huang, Yu-han ; Sun, Cheng-li ; Xiong, Bang-shu
Author_Institution
Sch. of Inf. Eng., NanChang HangKong Univ., Nanchang, China
fYear
2011
fDate
16-18 Dec. 2011
Firstpage
91
Lastpage
94
Abstract
Spot detection is an important step in 2D-GE image analysis. The results of Spot detection may substantially influence subsequent stages of gel image analysis. However, in current suggested methods, the detection of spot in complex regions are far from satisfactory. This paper provides an effective method to raise the accuracy of spot detection in complex regions where many protein spots are overlapped. The proposed method firstly employs the Euclidean distance transform to estimate the spot centroids in complex regions and locates new centroids using the geodesic distance measure, then split the spot regions based on geodesic distances according the estimated spot centroids. compared with the existing method, experiments indicated the suggested method has good and efficient performance in the gel detection task.
Keywords
biology computing; electrophoresis; molecular biophysics; object detection; proteins; transforms; 2D-GE image analysis; Euclidean distance transform; gel detection task; gel electrophoresis; gel image analysis; geodesic distance; protein spot; spot centroid; spot detection; Estimation; Euclidean distance; Image segmentation; Level measurement; Proteins; Transforms; distance transform; geodesic distance; k-Nearest Neighbor clustering; protein spot detection;
fLanguage
English
Publisher
ieee
Conference_Titel
Innovations in Bio-inspired Computing and Applications (IBICA), 2011 Second International Conference on
Conference_Location
Shenzhan
Print_ISBN
978-1-4577-1219-7
Type
conf
DOI
10.1109/IBICA.2011.27
Filename
6118687
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