DocumentCode
2931818
Title
Predictability of protein subcellular locations by pattern recognition techniques
Author
Jaramillo-Garzón, J.A. ; Perera-Lluna, A. ; Castellanos-Domínguez, C.G.
Author_Institution
Dept. de Ing. Electr., Electron. y Comput., Univ. Nac. de Colombia Sede Manizales, Manizales, Colombia
fYear
2010
fDate
Aug. 31 2010-Sept. 4 2010
Firstpage
5512
Lastpage
5515
Abstract
An analysis of the predictability of subcellular locations is performed by using simple pattern recognition techniques in an attempt to capture the real dimensions of the problem at hand. Results show that there are some particular locations that does not need of high complexity classification models to be predicted with high accuracies, and some partial biological explanations are formulated. All the experiments were carried out over a set of Arabidopsis Thaliana proteins and classes were defined according to the plants GO slim.
Keywords
biology computing; botany; cellular biophysics; molecular biophysics; pattern recognition; proteins; Arabidopsis thaliana proteins; pattern recognition techniques; protein subcellular location predictability; Accuracy; Amino acids; Biomembranes; Correlation; Markov processes; Ontologies; Proteins; Amino Acid Sequence; Arabidopsis Proteins; Databases, Protein; Pattern Recognition, Automated; Protein Transport; Subcellular Fractions;
fLanguage
English
Publisher
ieee
Conference_Titel
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE
Conference_Location
Buenos Aires
ISSN
1557-170X
Print_ISBN
978-1-4244-4123-5
Type
conf
DOI
10.1109/IEMBS.2010.5626772
Filename
5626772
Link To Document