• DocumentCode
    2931818
  • Title

    Predictability of protein subcellular locations by pattern recognition techniques

  • Author

    Jaramillo-Garzón, J.A. ; Perera-Lluna, A. ; Castellanos-Domínguez, C.G.

  • Author_Institution
    Dept. de Ing. Electr., Electron. y Comput., Univ. Nac. de Colombia Sede Manizales, Manizales, Colombia
  • fYear
    2010
  • fDate
    Aug. 31 2010-Sept. 4 2010
  • Firstpage
    5512
  • Lastpage
    5515
  • Abstract
    An analysis of the predictability of subcellular locations is performed by using simple pattern recognition techniques in an attempt to capture the real dimensions of the problem at hand. Results show that there are some particular locations that does not need of high complexity classification models to be predicted with high accuracies, and some partial biological explanations are formulated. All the experiments were carried out over a set of Arabidopsis Thaliana proteins and classes were defined according to the plants GO slim.
  • Keywords
    biology computing; botany; cellular biophysics; molecular biophysics; pattern recognition; proteins; Arabidopsis thaliana proteins; pattern recognition techniques; protein subcellular location predictability; Accuracy; Amino acids; Biomembranes; Correlation; Markov processes; Ontologies; Proteins; Amino Acid Sequence; Arabidopsis Proteins; Databases, Protein; Pattern Recognition, Automated; Protein Transport; Subcellular Fractions;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE
  • Conference_Location
    Buenos Aires
  • ISSN
    1557-170X
  • Print_ISBN
    978-1-4244-4123-5
  • Type

    conf

  • DOI
    10.1109/IEMBS.2010.5626772
  • Filename
    5626772