Title :
Parallel Finite Element Operator Application: Graph Partitioning and Coloring
Author :
Kormann, Katharina ; Kronbichler, Martin
Author_Institution :
Dept. of Inf. Technol., Uppsala Univ., Uppsala, Sweden
Abstract :
We present an efficient implementation of parallel finite element operator application for hexahedral elements. The implementation is tailored to data structures for adaptively refined meshes and exploits parallelism on modern computer systems. The evaluation of local shape functions and gradients is performed with sum-factorization that makes use of the tensor-product form. For shared memory parallelization, we propose a novel two-level partitioning/coloring approach that avoids race conditions when writing into the result vector. We give evidence for the good performance of our implementation. We employ the optimized operator implementation on a problem in quantum dynamics described by the time-dependent Schroedinger equation. We obtain a speedup of more than a factor four over conventional solvers based on sparse matrices for a moderate polynomial order of four in three dimensions.
Keywords :
Schrodinger equation; finite element analysis; graph colouring; mathematics computing; parallel processing; polynomial matrices; shared memory systems; sparse matrices; tensors; Schroedinger equation; data structures; graph coloring; graph partitioning; hexahedral elements; local shape function evaluation; parallel finite element operator application; polynomial order; quantum dynamics; shared memory parallelization; sparse matrix; sum-factorization; tensor-product form; Image color analysis; Jacobian matrices; Memory management; Parallel processing; Program processors; Sparse matrices; Vectors; matrix-free implementation; shared-memory parallelization; spectral element method;
Conference_Titel :
E-Science (e-Science), 2011 IEEE 7th International Conference on
Conference_Location :
Stockholm
Print_ISBN :
978-1-4577-2163-2
DOI :
10.1109/eScience.2011.53