Title :
Microarray Gene Expression Classification Based on Supervised Learning and Similarity Measures
Author :
Liu, Qingzhong ; Sung, Andrew H. ; Xu, Jianyun ; Liu, Jianzhong ; Chen, Zhongxue
Author_Institution :
New Mexico Tech., Socorro
Abstract :
Microarray gene expression data has high dimension and small samples, the gene selection is very important to the classification accuracy. In this paper, we present a scheme of recursive feature addition for microarray gene expression classification based on supervised learning and the similarity measure between chosen genes and candidates. In comparison with the well-known gene selection methods of T-TEST and SVM-RFE using different classifiers, our method, on the average, performs the best regarding the classification accuracy under different feature dimensions, the mean test accuracy and the highest test accuracy under the highest train accuracy, and the highest test accuracy in the experiments.
Keywords :
biology computing; feature extraction; genetics; learning (artificial intelligence); molecular biophysics; pattern classification; support vector machines; SVM-RFE gene selection method; T-TEST gene selection method; microarray gene expression data classification; recursive feature addition; similarity measures; supervised learning; support vector machines; Computer science; Cybernetics; DNA; Data analysis; Gene expression; Machine learning; Performance evaluation; Supervised learning; Support vector machines; Testing;
Conference_Titel :
Systems, Man and Cybernetics, 2006. SMC '06. IEEE International Conference on
Conference_Location :
Taipei
Print_ISBN :
1-4244-0099-6
Electronic_ISBN :
1-4244-0100-3
DOI :
10.1109/ICSMC.2006.385116