A Solution to Integrate the Phylogenetic Tree´s Generation Based on Web

Author

Lin, Xiaoguang ; Meng, Zhen ; He, Xing ; Liu, Qi ; Liu, Yong ; Li, Jianhui ; Zhou, Yuanchun

Author_Institution

Sci. Data Center, CAS, Beijing, China

fYear

2010

fDate

18-20 June 2010

Firstpage

1

Lastpage

3

Abstract

The phylogenetic tree´s generation is a complicated process, including data extraction, multiple sequences alignment, data editing & cleaning, data formats converting, tree reconstruction, tree visualization, etc. The process is fixed and carried out by calling a mass of third-party applications. To integrate these applications effectively, this paper introduces a solution to integrated phylogenetic tree´s generation based on web. And the solution has been successfully applied to the project PALPP to assist in gene sequence analysis of land plant.

Keywords

biology computing; evolution (biological); genetics; tree data structures; Web; data cleaning; data editing; data extraction; data formats conversion; gene sequence analysis; multiple sequences alignment; phylogenetic tree; tree reconstruction; tree visualization; Cleaning; Computer networks; Content addressable storage; Data mining; Helium; Open source software; Phylogeny; Sequences; Tree graphs; Visualization;

fLanguage

English

Publisher

ieee

Conference_Titel

Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on

Conference_Location

Chengdu

ISSN

2151-7614

Print_ISBN

978-1-4244-4712-1

Electronic_ISBN

2151-7614

Type

conf

DOI

10.1109/ICBBE.2010.5515956

Filename

5515956