• DocumentCode
    33905
  • Title

    Colored Noise Induced Bistable Switch in the Genetic Toggle Switch Systems

  • Author

    Pei Wang ; Jinhu Lu ; Xinghuo Yu

  • Author_Institution
    Sch. of Math. & Inf. Sci., Henan Univ., Kaifeng, China
  • Volume
    12
  • Issue
    3
  • fYear
    2015
  • fDate
    May-June 1 2015
  • Firstpage
    579
  • Lastpage
    589
  • Abstract
    Noise can induce various dynamical behaviors in nonlinear systems. White noise perturbed systems have been extensively investigated during the last decades. In gene networks, experimentally observed extrinsic noise is colored. As an attempt, we investigate the genetic toggle switch systems perturbed by colored extrinsic noise and with kinetic parameters. Compared with white noise perturbed systems, we show there also exists optimal colored noise strength to induce the best stochastic switch behaviors in the single toggle switch, and the best synchronized switching in the networked systems, which demonstrate that noise-induced optimal switch behaviors are widely in existence. Moreover, under a wide range of system parameter regions, we find there exist wider ranges of white and colored noises strengths to induce good switch and synchronization behaviors, respectively; therefore, white noise is beneficial for switch and colored noise is beneficial for population synchronization. Our observations are very robust to extrinsic stimulus strength, cell density, and diffusion rate. Finally, based on the Waddington´s epigenetic landscape and the Wiener-Khintchine theorem, physical mechanisms underlying the observations are interpreted. Our investigations can provide guidelines for experimental design, and have potential clinical implications in gene therapy and synthetic biology.
  • Keywords
    biodiffusion; cellular biophysics; genetics; stochastic processes; white noise; Waddington epigenetic landscape; Wiener-Khintchine theorem; cell density; colored extrinsic noise; colored noise induced bistable switch; diffusion rate; dynamical behaviors; extrinsic stimulus strength; gene networks; gene therapy; genetic toggle switch systems; kinetic parameters; nonlinear systems; optimal colored noise strength; stochastic switch behaviors; synchronization; synthetic biology; white noise perturbed systems; Colored noise; Computational biology; IEEE transactions; Proteins; Switches; Synchronization; Colored noise; bifurcation; bistable switch; quorum sensing; synchronization;
  • fLanguage
    English
  • Journal_Title
    Computational Biology and Bioinformatics, IEEE/ACM Transactions on
  • Publisher
    ieee
  • ISSN
    1545-5963
  • Type

    jour

  • DOI
    10.1109/TCBB.2014.2368982
  • Filename
    6951359