Title :
An Effective Multi-level Immune Algorithm for Graph Bipartitionin
Author :
Leng, Ming ; Sun, Lingyu ; Yu, Songnian
Author_Institution :
Dept. of Comput. Sci., Jinggangshan Univ., Ji´´an, China
Abstract :
An important application of graph partitioning is data clustering using a graph model--- the pairwise similarities between all data objects form a weighted graph adjacency matrix that contains all necessary information for clustering. An effective multi-level algorithm based on AIS (artificial immune systems) for graph bipartitioning is proposed. During its coarsening phase, we adopt an improved matching approach based on the global information of the graph core to develop its guidance function. During its refinement phase, we exploit the hybrid immune refinement algorithm inspired in the CSA (clonal selection algorithm) and affinity maturation of the AIS. The algorithm is verified to be capable of finding the global approximate bipartitioning which incorporate early-exit FM (FM-EE) local improvement heuristic into CSA. The success of our algorithm relies on exploiting both the CSA and the concept of the graph core. It is implemented with American National Standards Institute (ANSI) C and compared to MeTiS that is a state-of-the-art partitioner in the literature. Our experimental evaluations show that it performs well and produces encouraging solutions on 18 graphs benchmarks.
Keywords :
artificial immune systems; data handling; graph theory; matrix algebra; pattern clustering; ANSI C; American National Standards Institute; MeTiS comparison; affinity maturation; approximate bipartitioning; artificial immune system; clonal selection algorithm; data clustering; data objects; early-exit FM local improvement heuristic; graph bipartitioning; graph core; graph model; guidance function; hybrid immune refinement algorithm; matching approach; multilevel immune algorithm; pairwise similarity; weighted graph adjacency matrix; Artificial immune systems; Biology computing; Clustering algorithms; Heuristic algorithms; Immune system; Iterative algorithms; Particle swarm optimization; Partitioning algorithms; Switches; Symmetric matrices; bipartitionin; graph; immune algorithm; multi-level;
Conference_Titel :
Bioinformatics, Systems Biology and Intelligent Computing, 2009. IJCBS '09. International Joint Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-0-7695-3739-9
DOI :
10.1109/IJCBS.2009.12