DocumentCode
3461685
Title
Optimizing Big Data in Bioinformatics with Swarm Algorithms
Author
Abdul-Rahman, Shuzlina ; Bakar, Afarulrazi Abu ; Mohamed-Hussein, Zeti-Azura
Author_Institution
Center of Inf. Syst. Studies, Univ. Teknol. MARA, Shah Alam, Malaysia
fYear
2013
fDate
3-5 Dec. 2013
Firstpage
1091
Lastpage
1095
Abstract
This paper describes the application of swarm algorithms on bioinformatics data namely protein sequences. The big data that exists in bioinformatics domains require an intelligent method that capable to increase the performance of classification as well as discovering the knowledge. The work optimizes the big features that exist in protein sequences using the two-tier hybrid model by applying the filter and wrapper method. The use of swarm algorithm namely particle swarm optimization has improved the classification accuracy as the features are optimized prior to classification. The study also compares the performance of swarm algorithms with the standard searching method.
Keywords
Big Data; bioinformatics; data mining; particle swarm optimisation; pattern classification; proteins; Big Data optimization; bioinformatics data; bioinformatics domains; classification accuracy; classification performance; filter and wrapper method; intelligent method; knowledge discovery; particle swarm optimization; protein sequences; two-tier hybrid model; Accuracy; Bioinformatics; Feature extraction; Filtering algorithms; Particle swarm optimization; Proteins; big data; bioinformatics; particle swarm optimisation; protein sequences; swarm intelligent;
fLanguage
English
Publisher
ieee
Conference_Titel
Computational Science and Engineering (CSE), 2013 IEEE 16th International Conference on
Conference_Location
Sydney, NSW
Type
conf
DOI
10.1109/CSE.2013.158
Filename
6755339
Link To Document