• DocumentCode
    3461685
  • Title

    Optimizing Big Data in Bioinformatics with Swarm Algorithms

  • Author

    Abdul-Rahman, Shuzlina ; Bakar, Afarulrazi Abu ; Mohamed-Hussein, Zeti-Azura

  • Author_Institution
    Center of Inf. Syst. Studies, Univ. Teknol. MARA, Shah Alam, Malaysia
  • fYear
    2013
  • fDate
    3-5 Dec. 2013
  • Firstpage
    1091
  • Lastpage
    1095
  • Abstract
    This paper describes the application of swarm algorithms on bioinformatics data namely protein sequences. The big data that exists in bioinformatics domains require an intelligent method that capable to increase the performance of classification as well as discovering the knowledge. The work optimizes the big features that exist in protein sequences using the two-tier hybrid model by applying the filter and wrapper method. The use of swarm algorithm namely particle swarm optimization has improved the classification accuracy as the features are optimized prior to classification. The study also compares the performance of swarm algorithms with the standard searching method.
  • Keywords
    Big Data; bioinformatics; data mining; particle swarm optimisation; pattern classification; proteins; Big Data optimization; bioinformatics data; bioinformatics domains; classification accuracy; classification performance; filter and wrapper method; intelligent method; knowledge discovery; particle swarm optimization; protein sequences; two-tier hybrid model; Accuracy; Bioinformatics; Feature extraction; Filtering algorithms; Particle swarm optimization; Proteins; big data; bioinformatics; particle swarm optimisation; protein sequences; swarm intelligent;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computational Science and Engineering (CSE), 2013 IEEE 16th International Conference on
  • Conference_Location
    Sydney, NSW
  • Type

    conf

  • DOI
    10.1109/CSE.2013.158
  • Filename
    6755339