• DocumentCode
    3486924
  • Title

    Design and optimization of a digital microfluidic biochip for protein crystallization

  • Author

    Xu, Tao ; Chakrabarty, Krishnendu ; Pamula, Vamsee K.

  • Author_Institution
    Dept. of Electr. & Comput. Eng., Duke Univ., Durham, NC
  • fYear
    2008
  • fDate
    10-13 Nov. 2008
  • Firstpage
    297
  • Lastpage
    301
  • Abstract
    Proteins crystallization is a commonly used technique for protein analysis and subsequent drug design. It predicts the three-dimensional arrangement of the constituent amino acids, which in turn indicates the specific biological function of a protein. Protein crystallization experiments are typically carried out manually on multi-well plates in the laboratory. These experiments are slow, expensive, and error-prone. We present the design of a multi-well plate microfluidic biochip for protein crystallization; this biochip can transfer protein samples, prepare candidate solutions, and carry out crystallization automatically. To reduce the manufacturing cost of such devices, we present an efficient algorithm to generate a pin-assignment plan for the proposed design. The resulting biochip enables control of a large number of on-chip electrodes using only a small number of pins. Based on the pin-constrained chip design, we present an efficient shuttle-passenger-like droplet manipulation method to achieve high-throughput and defect-tolerant well loading.
  • Keywords
    bioMEMS; biochemistry; crystallisation; digital integrated circuits; microfluidics; plates (structures); proteomics; amino acids; crystallization; digital microfluidic biochip; multi-well plates; on-chip electrodes; protein; shuttle-passenger-like droplet manipulation; three-dimensional arrangement; Algorithm design and analysis; Amino acids; Costs; Crystallization; Design optimization; Drugs; Laboratories; Manufacturing; Microfluidics; Proteins;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer-Aided Design, 2008. ICCAD 2008. IEEE/ACM International Conference on
  • Conference_Location
    San Jose, CA
  • ISSN
    1092-3152
  • Print_ISBN
    978-1-4244-2819-9
  • Electronic_ISBN
    1092-3152
  • Type

    conf

  • DOI
    10.1109/ICCAD.2008.4681589
  • Filename
    4681589