Title :
A Multiscale Graph Theoretical Approach to Gene Regulation Networks: A Case Study in Atrial Fibrillation
Author :
Censi, Federica ; Giuliani, Alessandro ; Bartolini, P. ; Calcagnini, Giovanni
Author_Institution :
Italian Nat. Inst. of Health (Ist. Superiore di Sanita), Rome, Italy
Abstract :
The changes in between gene expression correlation structure induced in heart tissue by atrial fibrillation are studied by means of a graph theoretical approach. As expected by general statistical mechanics principles, the disease increases the general connectivity of the gene regulation network; the multiscale character of the analysis allows us to get both a general appreciation of regulation network connectivity and the sketching of a biological interpretation of the studied disease. The presence of a still largely unknown, scale invariant, global correlation field encompassing the entire genome is demonstrated as well.
Keywords :
cardiology; complex networks; diseases; genomics; graph theory; atrial fibrillation; disease; gene expression correlation structure; gene regulation networks; heart tissue; multiscale graph theoretical approach; network connectivity; Bioinformatics; Correlation; Diseases; Gene expression; Genomics; Proteins; Bioinformatics; computational systems biology; data mining; fibrillation; Algorithms; Atrial Fibrillation; Case-Control Studies; Computational Biology; Data Mining; Gene Expression Profiling; Gene Regulatory Networks; Humans; Models, Genetic; Oligonucleotide Array Sequence Analysis;
Journal_Title :
Biomedical Engineering, IEEE Transactions on
Conference_Location :
5/5/2011 12:00:00 AM
DOI :
10.1109/TBME.2011.2150747