Title :
Fast Blending Scheme for Molecular Surface Representation
Author :
Parulek, Julius ; Brambilla, Angelo
Author_Institution :
Dept. ofInformatics, Univ. of Bergen, Bergen, Norway
Abstract :
Representation of molecular surfaces is a well established way to study the interaction of molecules. The state-of-theart molecular representation is the SES model, which provides a detailed surface visualization. Nevertheless, it is computationally expensive, so the less accurate Gaussian model is traditionally preferred. We introduce a novel surface representation that resembles the SES and approaches the rendering performance of the Gaussian model. Our technique is based on the iterative blending of implicit functions and avoids any pre-computation. Additionally, we propose a GPU-based ray-casting algorithm that efficiently visualize our molecular representation. A qualitative and quantitative comparison of our model with respect to the Gaussian and SES models is presented. As showcased in the paper, our technique is a valid and appealing alternative to the Gaussian representation. This is especially relevant in all the applications where the cost of the SES is prohibitive.
Keywords :
Gaussian processes; biology computing; data visualisation; iterative methods; molecular biophysics; ray tracing; rendering (computer graphics); GPU-based ray-casting algorithm; Gaussian model; Gaussian representation; SES model; fast blending scheme; implicit functions; iterative blending; molecular representation visualization; molecular surface representation; molecules interaction; qualitative comparison; quantitative comparison; rendering performance; surface visualization; Atomic measurements; Computational modeling; Mathematical model; Rendering (computer graphics); Solvents; Atomic measurements; Computational modeling; Mathematical model; Molecular visualization; Rendering (computer graphics); Solvents; geometry-based techniques; implicit surfaces; Algorithms; Computer Simulation; Image Enhancement; Image Interpretation, Computer-Assisted; Imaging, Three-Dimensional; Models, Chemical; Models, Molecular; Molecular Conformation; Phospholipids; Reproducibility of Results; Sensitivity and Specificity; Surface Properties;
Journal_Title :
Visualization and Computer Graphics, IEEE Transactions on
DOI :
10.1109/TVCG.2013.158