DocumentCode
54055
Title
Fast Blending Scheme for Molecular Surface Representation
Author
Parulek, Julius ; Brambilla, Angelo
Author_Institution
Dept. ofInformatics, Univ. of Bergen, Bergen, Norway
Volume
19
Issue
12
fYear
2013
fDate
Dec. 2013
Firstpage
2653
Lastpage
2662
Abstract
Representation of molecular surfaces is a well established way to study the interaction of molecules. The state-of-theart molecular representation is the SES model, which provides a detailed surface visualization. Nevertheless, it is computationally expensive, so the less accurate Gaussian model is traditionally preferred. We introduce a novel surface representation that resembles the SES and approaches the rendering performance of the Gaussian model. Our technique is based on the iterative blending of implicit functions and avoids any pre-computation. Additionally, we propose a GPU-based ray-casting algorithm that efficiently visualize our molecular representation. A qualitative and quantitative comparison of our model with respect to the Gaussian and SES models is presented. As showcased in the paper, our technique is a valid and appealing alternative to the Gaussian representation. This is especially relevant in all the applications where the cost of the SES is prohibitive.
Keywords
Gaussian processes; biology computing; data visualisation; iterative methods; molecular biophysics; ray tracing; rendering (computer graphics); GPU-based ray-casting algorithm; Gaussian model; Gaussian representation; SES model; fast blending scheme; implicit functions; iterative blending; molecular representation visualization; molecular surface representation; molecules interaction; qualitative comparison; quantitative comparison; rendering performance; surface visualization; Atomic measurements; Computational modeling; Mathematical model; Rendering (computer graphics); Solvents; Atomic measurements; Computational modeling; Mathematical model; Molecular visualization; Rendering (computer graphics); Solvents; geometry-based techniques; implicit surfaces; Algorithms; Computer Simulation; Image Enhancement; Image Interpretation, Computer-Assisted; Imaging, Three-Dimensional; Models, Chemical; Models, Molecular; Molecular Conformation; Phospholipids; Reproducibility of Results; Sensitivity and Specificity; Surface Properties;
fLanguage
English
Journal_Title
Visualization and Computer Graphics, IEEE Transactions on
Publisher
ieee
ISSN
1077-2626
Type
jour
DOI
10.1109/TVCG.2013.158
Filename
6634161
Link To Document