• DocumentCode
    54055
  • Title

    Fast Blending Scheme for Molecular Surface Representation

  • Author

    Parulek, Julius ; Brambilla, Angelo

  • Author_Institution
    Dept. ofInformatics, Univ. of Bergen, Bergen, Norway
  • Volume
    19
  • Issue
    12
  • fYear
    2013
  • fDate
    Dec. 2013
  • Firstpage
    2653
  • Lastpage
    2662
  • Abstract
    Representation of molecular surfaces is a well established way to study the interaction of molecules. The state-of-theart molecular representation is the SES model, which provides a detailed surface visualization. Nevertheless, it is computationally expensive, so the less accurate Gaussian model is traditionally preferred. We introduce a novel surface representation that resembles the SES and approaches the rendering performance of the Gaussian model. Our technique is based on the iterative blending of implicit functions and avoids any pre-computation. Additionally, we propose a GPU-based ray-casting algorithm that efficiently visualize our molecular representation. A qualitative and quantitative comparison of our model with respect to the Gaussian and SES models is presented. As showcased in the paper, our technique is a valid and appealing alternative to the Gaussian representation. This is especially relevant in all the applications where the cost of the SES is prohibitive.
  • Keywords
    Gaussian processes; biology computing; data visualisation; iterative methods; molecular biophysics; ray tracing; rendering (computer graphics); GPU-based ray-casting algorithm; Gaussian model; Gaussian representation; SES model; fast blending scheme; implicit functions; iterative blending; molecular representation visualization; molecular surface representation; molecules interaction; qualitative comparison; quantitative comparison; rendering performance; surface visualization; Atomic measurements; Computational modeling; Mathematical model; Rendering (computer graphics); Solvents; Atomic measurements; Computational modeling; Mathematical model; Molecular visualization; Rendering (computer graphics); Solvents; geometry-based techniques; implicit surfaces; Algorithms; Computer Simulation; Image Enhancement; Image Interpretation, Computer-Assisted; Imaging, Three-Dimensional; Models, Chemical; Models, Molecular; Molecular Conformation; Phospholipids; Reproducibility of Results; Sensitivity and Specificity; Surface Properties;
  • fLanguage
    English
  • Journal_Title
    Visualization and Computer Graphics, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    1077-2626
  • Type

    jour

  • DOI
    10.1109/TVCG.2013.158
  • Filename
    6634161