Title :
Multithreaded global address space communication techniques for Gyrokinetic fusion applications on ultra-scale platforms
Author :
Preissl, Robert ; Wichmann, Nathan ; Long, Bill ; Shalf, John ; Ethier, Stephane ; Koniges, Alice
Author_Institution :
Lawrence Berkeley Nat. Lab., Berkeley, CA, USA
Abstract :
We present novel parallel language constructs for the communication intensive part of a magnetic fusion simulation code. The focus of this work is the shift phase of charged particles of a tokamak simulation code in toroidal geometry. We introduce new hybrid PGAS/OpenMP implementations of highly optimized hybrid MPI/OpenMP based communication kernels. The hybrid PGAS implementations use an extension of standard hybrid programming techniques, enabling the distribution of high communication work loads of the underlying kernel among OpenMP threads. Building upon lightweight one-sided CAF (Fortran 2008) communication techniques, we also show the benefits of spreading out the communication over a longer period of time, resulting in a reduction of bandwidth requirements and a more sustained communication and computation overlap. Experiments on up to 130560 processors are conducted on the NERSC Hopper system, which is currently the largest HPC platform with hardware support for one-sided communication and show performance improvements of 52% at highest concurrency.
Keywords :
Tokamak devices; application program interfaces; multi-threading; optimisation; parallel languages; plasma kinetic theory; plasma simulation; plasma toroidal confinement; Gyrokinetic fusion; OpenMP implementation; global address space communication; hybrid MPI; hybrid PGAS; hybrid programming techniques; magnetic fusion simulation code; multithreading; optimization; parallel language; tokamak simulation code; toroidal geometry; Arrays; Computational modeling; Electronics packaging; Instruction sets; Message systems; Coarrays; Fortran 2008; Hybrid MPI/OpenMP & PGAS/OpenMP computing; Particle-In-Cell;
Conference_Titel :
High Performance Computing, Networking, Storage and Analysis (SC), 2011 International Conference for
Conference_Location :
Seatle, WA
Electronic_ISBN :
978-1-4503-0771-0