A novel pairwise sequence matching technique with genetic algorithm

Author

Garai, Gautam ; Chowdhury, Badrul

Author_Institution

Comput. Sc. Div., Saha Inst. of Nucl. Phys., Kolkata, India

fYear

2012

fDate

Nov. 30 2012-Dec. 1 2012

Firstpage

62

Lastpage

65

Abstract

The active research of sequence alignment in the field of Bioinformatics plays an important role in molecular sequence analysis. In cases of pairwise as well as multi-sequence alignment, the objective is to maximize the similarities between the sequences which constitute of residues i.e. nucleotides for DNA/RNA and amino acids for proteins. We have proposed an efficient genetic algorithm based optimized sequence matching method for finding match between two DNA sequences. The process is compared with relevant pairwise sequence alignment techniques.

Keywords

bioinformatics; genetic algorithms; pattern matching; proteins; DNA nucleotides; RNA nucleotides; active research; amino acids; bioinformatics; genetic algorithm; molecular sequence analysis; multisequence alignment; novel pairwise sequence matching technique; proteins; sequence alignment; Bioinformatics; DNA; Databases; Genetic algorithms; RNA; Sociology; Statistics; Bioinformatics; DNA; Genetic Algorithm; Sequence alignment;

fLanguage

English

Publisher

ieee

Conference_Titel

Emerging Applications of Information Technology (EAIT), 2012 Third International Conference on

Conference_Location

Kolkata

Print_ISBN

978-1-4673-1828-0

Type

conf

DOI

10.1109/EAIT.2012.6407862

Filename

6407862