DocumentCode
646181
Title
Model-order reduction of biochemical reaction networks
Author
Rao, Smitha ; van der Schaft, Arjan ; van Eunen, Karen ; Bakker, Barbara M. ; Jayawardhana, Bayu
Author_Institution
Center for Syst. Biol., Univ. of Groningen, Groningen, Netherlands
fYear
2013
fDate
17-19 July 2013
Firstpage
4502
Lastpage
4507
Abstract
In this paper we propose a model-order reduction method for chemical reaction networks governed by general enzyme kinetics, including the mass-action and Michaelis-Menten kinetics. The model-order reduction method is based on the Kron reduction of the weighted Laplacian matrix which describes the graph structure of complexes in the chemical reaction network. We apply our method to a yeast glycolysis model, where the simulation result shows that the transient behaviour of a number of key metabolites of the reduced-order model is in good agreement with those of the full-order model.
Keywords
biology; graph theory; matrix algebra; reduced order systems; Kron reduction; Michaelis-Menten kinetics; biochemical reaction networks; full-order model; general enzyme kinetics; key metabolites; model-order reduction method; weighted Laplacian matrix; yeast glycolysis model; Biochemistry; Biological system modeling; Chemicals; Kinetic theory; Mathematical model; Reduced order systems; Vectors;
fLanguage
English
Publisher
ieee
Conference_Titel
Control Conference (ECC), 2013 European
Conference_Location
Zurich
Type
conf
Filename
6669587
Link To Document