• DocumentCode
    646181
  • Title

    Model-order reduction of biochemical reaction networks

  • Author

    Rao, Smitha ; van der Schaft, Arjan ; van Eunen, Karen ; Bakker, Barbara M. ; Jayawardhana, Bayu

  • Author_Institution
    Center for Syst. Biol., Univ. of Groningen, Groningen, Netherlands
  • fYear
    2013
  • fDate
    17-19 July 2013
  • Firstpage
    4502
  • Lastpage
    4507
  • Abstract
    In this paper we propose a model-order reduction method for chemical reaction networks governed by general enzyme kinetics, including the mass-action and Michaelis-Menten kinetics. The model-order reduction method is based on the Kron reduction of the weighted Laplacian matrix which describes the graph structure of complexes in the chemical reaction network. We apply our method to a yeast glycolysis model, where the simulation result shows that the transient behaviour of a number of key metabolites of the reduced-order model is in good agreement with those of the full-order model.
  • Keywords
    biology; graph theory; matrix algebra; reduced order systems; Kron reduction; Michaelis-Menten kinetics; biochemical reaction networks; full-order model; general enzyme kinetics; key metabolites; model-order reduction method; weighted Laplacian matrix; yeast glycolysis model; Biochemistry; Biological system modeling; Chemicals; Kinetic theory; Mathematical model; Reduced order systems; Vectors;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Control Conference (ECC), 2013 European
  • Conference_Location
    Zurich
  • Type

    conf

  • Filename
    6669587