Title :
Inferring global a priori identifiability of optical biosensor experiment models
Author_Institution :
Dept. of Math. & Stat., Univ. of Melbourne, Melbourne, VIC, Australia
Abstract :
Flow-cell optical biosensors are a popular means of studying biomolecular interactions. The time course of data produced shows the progress of the interaction in real time. In a quantitative study, data is used to estimate parameters, such as rate constants, in a mathematical model of interactant concentrations over time. A study unable to assign a unique estimate to each parameter may be less informative than desired. This result can be anticipated prior to data collection by testing the assumed model class for global a priori identifiability. In the case where an interaction model is an uncontrolled continuous-time linear switching system, the testing method available is applicable only in a special case. This paper proposes an algorithm that is sufficient for classifying a previously unclassified test case as globally a priori identifiable.
Keywords :
biochemistry; biosensors; cellular biophysics; molecular biophysics; optical sensors; biomolecular interactions; data collection; flow-cell optical biosensors; global-a-priori identifiability; interactant concentrations; mathematical model; testing method; uncontrolled continuous-time linear switching system; Biological system modeling; Biomedical optical imaging; Biosensors; Classification algorithms; Mathematical model; Optical sensors; Testing; Flow-cell optical biosensor experiments; biomolecular interaction; experimental design; global a priori identifiability;
Conference_Titel :
Bioinformatics and Biomedicine (BIBM), 2013 IEEE International Conference on
Conference_Location :
Shanghai
DOI :
10.1109/BIBM.2013.6732453