DocumentCode
691889
Title
Optimization Strategies for MPI-Interoperable Active Messages
Author
Xin Zhao ; Balaji, Pavan ; Gropp, William ; Thakur, Rahul
Author_Institution
Univ. of Illinois at Urbana-Champaign, Urbana, IL, USA
fYear
2013
fDate
21-22 Dec. 2013
Firstpage
508
Lastpage
515
Abstract
Data-intensive applications, such as those in bioinformatics and social network analysis, differ from traditional scientific applications in that they often involve data-driven and irregular computation/communication patterns, making them ill-suited for traditional data movement approaches. Active Messages (AM) is an alternative programming model that allows dynamically moving computation closer to data, rather than moving the data to the local process. In our previous work, we proposed an MPI-interoperable AM framework that allows existing MPI applications to incrementally take advantage of AM capabilities. While that work presented a baseline implementation of how AMs semantically interact with the rest of the MPI infrastructure, it had several performance shortcomings. In this paper, we analyze these performance shortcomings and propose three optimization strategies: one implicitly derived by the MPI implementation and two explicitly hinted to by the application user. In addition to the detailed description of these optimization strategies, the paper presents a thorough performance evaluation on a 4096-core cluster that demonstrates considerable performance advantages from these strategies.
Keywords
message passing; open systems; optimisation; 4096-core cluster; AM; MPI-interoperable active messages; bioinformatics; data movement approaches; data-intensive applications; irregular computation-communication patterns; optimization strategies; scientific applications; social network analysis; Bioinformatics; Layout; Optimization; Pipelines; Runtime; Semantics; Synchronization; Active messages; Data-intensive applications; MPI; Multicore; RMA;
fLanguage
English
Publisher
ieee
Conference_Titel
Dependable, Autonomic and Secure Computing (DASC), 2013 IEEE 11th International Conference on
Conference_Location
Chengdu
Print_ISBN
978-1-4799-3380-8
Type
conf
DOI
10.1109/DASC.2013.116
Filename
6844416
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